PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0046s0310.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 558aa    MW: 61998.3 Da    PI: 6.7187
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0046s0310.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-05459479323
                          ETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                          C++Cgk F ++ ++++H+++ H
  Kaladp0046s0310.2.p 459 CEKCGKAF-QQAEMEKHMKVfH 479
                          ********.**********988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031521.7E-4190260IPR004854Ubiquitin fusion degradation protein UFD1
SuperFamilySSF495991.11E-5411461IPR008974TRAF-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MDFELRRARE KLEKEQKERK EKARLKLERE RKAKLEAFRQ QEAIEAARRT RRIDAAEAQL  60
KADEQMQESL IAGKGIVFHR FLTPVLYEGS GDKIKLPLSC FKELSDQGAF DKGPLYFRLS  120
VVQQNSPSDP NPNGEDTQRS THSGVLEFTV DEDCVALPRH VWNNLFPTAA IAAPLVEVRY  180
VWLPKGVYAK LQPDRIGFSD IPNHKAVLET ILRHHATLSE NDLLTVNHGI LTYTLRVLEL  240
RPSSSVSVLE TDIEVDVVSP DKTSITADQP YLQPLELGKS ESGALDEGNY VYYKFSINGD  300
VWSIIESGDA NVCVKMETGE NDGDTDLYVS RHPLLFPTTH QHQWSSHDVG SKTLTMTAMD  360
ENLGAGSYTV GVYGFKGTSK YKLTVTVEAA ASQKVGLKAT STSQAAEVDT VECRNCKHLI  420
PSRSITLHEA YCSRNNVTCK RPGCGVVLRV GEAKNHVHCE KCGKAFQQAE MEKHMKVFHE  480
PLQCPCGVLL EKEDMVQHQA ADCPLRLITC RFCGDMVQAG NSAIDVRDRM RGLSEHESGC  540
GSRTAPCSTC GRESLKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2yuj_A2e-219125640187Ubiquitin fusion degradation 1-like
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273297.10.0PREDICTED: uncharacterized protein LOC100246609
TrEMBLF6HID70.0F6HID7_VITVI; Putative uncharacterized protein
STRINGVIT_12s0059g01100.t010.0(Vitis vinifera)